Parts of document missed when printed

I have a pdf made for me in indesign CS5 this looks fine on the screen but when I print the image is not as shown on the screen.
 
The image on the pdf is 3 circles overlapping and with our company logo in the middle. When printed the circle at the front is on top of the other 2 and no logo is shown. I have just printed as normal select double sided and print. I have checked document and markups as I know if added after the pdf was made it may not show but still get the same result. Any advice on where I am going wrong or is it how the pdf was made.
 
I had another issue the other day from someone else where the top line of a leaflet printed in red instead of green, spoke to him and he re made the pdf saying it's a transparency issue in indesign. Unfortunately I can t talk to him today. Any advice appreciated.