We are using a Fujitsu ScanScap to scan a number of documents to pdf format. Often one or more pages within a scan ends up rotated, sometimes a full 180 degrees, sometimes 90 degrees one way or the other. I have tried multiple settings correct this problem at the scanning level or corrections within the pdf file after scanning and have not found a way to either prevent or stably correct this problem.
There are different versions of the Fujitsu ScanScap and without knowing which one you have it's difficult to troubleshoot your issue. However, Rick Borstein has some suggestions on using Acrobat with ScanSnap (S510 and fi-5110C) on his blog at:
[url=http://blogs.adobe.com/acrolaw/2007/09/using_acrobat_with_the_fujitsu_f.php]http://blogs.adobe.com/acrolaw/2007/09/using_acrobat_with_the_fujitsu_f.php[/url]
Hope this helps,
Lori
Lori Kassuba is an AUC Expert and Community Manager for AcrobatUsers.com.